Back

BMC Infectious Diseases

Springer Science and Business Media LLC

Preprints posted in the last 30 days, ranked by how well they match BMC Infectious Diseases's content profile, based on 118 papers previously published here. The average preprint has a 0.15% match score for this journal, so anything above that is already an above-average fit.

1
Advanced HIV disease and treatment-related adverse drug reactions among people living with HIV receiving antiretroviral therapy in Tanzania: a multicenter cross-sectional study

Mutagonda, R. F.; Kibanga, W. A.; Mikomangwa, W. P.; Kamuhabwa, A. A.

2026-06-02 hiv aids 10.64898/2026.05.30.26354502 medRxiv
Top 0.1%
10.0%
Show abstract

Background: Advanced HIV disease (AHD) remains a major contributor to HIV-related morbidity and mortality despite widespread antiretroviral therapy (ART) access in sub-Saharan Africa. Although treatment-related adverse drug reactions (ADRs) may compromise treatment outcomes, evidence on the relationship between AHD and ADR occurrence remains limited. This study aimed to determine the prevalence and identify factors associated with AHD, characterize treatment-related ADR and assess the association between AHD and ADR occurrence among people living with HIV receiving ART in Dar es Salaam, Tanzania. Methods: We conducted a multicenter cross-sectional study among 1,513 people living with HIV receiving ART at selected HIV care and treatment clinics in Dar es Salaam, TanzaniaFor this adolescent/adult cohort, AHD was operationally defined as WHO clinical stage III/IV disease and/or baseline CD4 count <200 cells/mm3. Treatment-related ADRs were defined as participant-reported and/or clinically documented ART-related adverse events identified during routine HIV care, including both current and retrospectively reported events. Modified Poisson regression with robust standard errors was used to estimate crude and adjusted risk ratios (RRs) with 95% confidence intervals (CIs). Results: Among 1,508 participants with sufficient information for classification, 961 (63.7%) had AHD. Factors independently associated with AHD included age [&ge;]50 years (aRR 1.10, 95% CI 1.01-1.20), underweight nutritional status (aRR 1.17, 95% CI 1.00-1.35), and concomitant medication use (aRR 1.19, 95% CI 1.03-1.37), while DTG-based ART was associated with lower AHD prevalence (aRR 0.78, 95% CI 0.68-0.90). Overall, 569 participants (38.0%) reported at least one ADR. Composite AHD was not independently associated with ADR occurrence (aRR 0.95, 95% CI 0.82-1.11), but baseline CD4 <200 cells/mm3 was associated with increased ADR risk (aRR 1.20, 95% CI 1.02-1.41). Comorbidity (aRR 1.66, 95% CI 1.42-1.93) was the strongest correlate of ADR occurrence. Conclusion: AHD remains highly prevalent among people living with HIV receiving ART in Tanzania. While composite AHD was not independently associated with ADR occurrence, severe immunosuppression, comorbidity burden, and concomitant medication exposure were associated with increased ADR risk. These findings suggest that immunologic severity and broader clinical complexity may be more informative predictors of ART-related toxicity than composite syndromic AHD classification alone. Strengthened early diagnosis, differentiated advanced HIV care, integrated pharmacovigilance strategies, and routine medication risk assessment are needed.

2
Prevalence and Factors Associated with Methicillin-Resistant Staphylococcus Nasal Carriage Among People Living with HIV at Kiruddu National Referral Hospital, Kampala, Uganda

Babirye, J. A.; Bwanga, F.; Nakalega, R.; Mawanda, D.; Kugonza, C. D.; Namiiro, S. M.; Nakiganda, M.; Semitala, F.; Byakika-Kibwika, P.

2026-05-27 infectious diseases 10.64898/2026.05.26.26354086 medRxiv
Top 0.1%
8.5%
Show abstract

Methicillin-resistant Staphylococcus (MRS) infections are a significant public health concern. Anterior nares serve as a major reservoir and source of spread of MRS ssp. People living with HIV (PLWHIV) tend to be at higher risk of colonisation with MRS organisms due to frequent healthcare exposure. We assessed the prevalence of MRS nasal carriage and associated factors among PLWHIV at the HIV clinic of Kiruddu National Referral Hospital, Kampala, Uganda, from May to July 2024. Nasal swabs from 256 PLWHIV were cultured, and microbiological isolation was performed at MBN Clinical Laboratories. Prevalence was calculated as proportions, and logistic regression identified associations with clinical and socio-demographic factors (p < 0.05). Of 256 participants, 163 (63.7%) carried Staphylococcus, with 82 (32%) identified as MRS carriers (8.9% MRSA, 23% MRCoNS). Frequent hospital visits ([&ge;]3) (adjusted incidence risk ratio [A-IRR] = 1.18 x 107, p < 0.001), second-line antiretroviral therapy (ART) (A-IRR = 3.82, p = 0.041), and unsuppressed viral load (>1000 copies/mL) (adjusted odds ratio [AOR] = 11.3, 95% CI: 2.11-60.58, p = 0.005) were significantly associated with MRS carriage. Mask-wearing was protective against MRCoNS (A-IRR = 1.66, 95% CI: 1.06-2.58, p = 0.026). MRS isolates exhibited high resistance to erythromycin (81.7%) and trimethoprim-sulfamethoxazole (79.3%), but susceptibility to linezolid (93.9%). MRS nasal carriage is prevalent among PLWHIV. Individuals with frequent health care contact and those on second-line ART regimens are more susceptible to MRS colonization, while individuals who wear face masks and those with an undetectable HIV viral load are less susceptible. Antimicrobial Resistance (AMR) surveillance within HIV programs, enhanced infection control, ART adherence, and targeted screening for high-risk groups are critical to mitigate colonization.

3
TRENDS-Thai: decadal trends of dengue, chikungunya, and hand, foot, and mouth disease in Thailand (2016-2025): a multi-disease time-series analysis of COVID-19 disruption

Pongpirul, W.; Ahmed, M. M.; Pongpirul, K.

2026-05-24 infectious diseases 10.64898/2026.05.21.26353796 medRxiv
Top 0.1%
8.3%
Show abstract

Introduction: Dengue, chikungunya, and hand, foot, and mouth disease (HFMD) are priority notifiable infections in Thailand. Whether vector-borne and contact-mediated diseases responded differently to the coronavirus disease 2019 pandemic has not been quantified within a unified national surveillance framework over an extended period. Methods: We conducted an ecological interrupted time-series analysis using weekly province-level notifiable disease surveillance data from epidemiological week 1 of 2016 to week 53 of 2025 across all 77 Thai provinces. Incidence per 100,000 population was calculated using year-specific civil registration population denominators. Segmented quasi-Poisson regression with two Fourier harmonics for annual seasonality was fitted, with the primary pandemic onset defined as week 1 of 2020 and two alternative onset definitions prespecified for sensitivity analysis. Results: The analysis included 40,579 province-week observations across 527 epidemiological weeks, comprising 790,263 dengue, 32,265 chikungunya, and 713,822 HFMD cases nationally. Immediate incidence rate ratios at pandemic onset were 0.39, 0.54, and 0.51 for dengue, chikungunya, and HFMD, respectively. Sustained post-onset trends diverged across diseases, with declining trajectories for the two vector-borne infections and a positive post-onset slope for hand, foot, and mouth disease. Dengue rebounded above pre-pandemic levels by 2023, chikungunya remained quiescent through 2025, and HFMD exceeded its pre-pandemic baseline by approximately 26%. Conclusion: Vector-borne and contact-mediated diseases in Thailand followed sharply contrasting decadal trajectories that tracked the transmission ecologies of each pathogen. These findings support transmission-mode-specific pandemic-resilient surveillance, accelerated arboviral and enteroviral vaccine deployment, and integrated vector management.

4
COVID-19 vaccination and the risk of cardiovascular and thromboembolic events after SARS-CoV-2 infection: a systematic review and meta-analysis

Heymans, S.; Heidecker, B.; Marjenberg, Z.; Green, R.; Pliakas, T.; Lip, G. Y. H.; Lüscher, T. F.; Abduljawad, S.

2026-05-22 infectious diseases 10.64898/2026.05.21.26353568 medRxiv
Top 0.2%
6.8%
Show abstract

Background and Aims SARS-CoV-2 infection is associated with an increased risk of cardiovascular, cerebrovascular and venous thromboembolism events. We aimed to assess the impact of COVID-19 vaccination prior to SARS-CoV-2 infection on the risk of these events post-infection. Methods Embase and MEDLINE were searched from January 2021 to 11 September 2025, supplemented by citation searching. Observational studies were included if they reported risks of cardiovascular, cerebrovascular, or venous thromboembolic events after SARS-CoV-2 infection between different vaccination groups (e.g. unvaccinated, vaccinated, or booster vaccinated), or reported risk of events after SARS-CoV-2 infection compared with no infection, stratified by vaccination status. Random-effects meta-analyses were conducted to estimate pooled hazard ratios (HRs) comparing vaccinated and unvaccinated individuals across prespecified outcomes. Results Twenty-three studies were included in the systematic review; most reported an association between vaccination and a reduced risk of post-infection vascular events. Ten studies were included across meta-analyses comparing vaccinated and unvaccinated individuals. Pre-infection vaccination was associated with significantly reduced risks of composite cardiovascular/cerebrovascular events (HR 0.60, 95% confidence intervals [CI] 0.51-0.69), stroke (HR 0.75, 95% CI 0.64-0.88), acute coronary syndrome (HR 0.70, 95% CI 0.52-0.95), arrhythmias (HR 0.82, 95% CI 0.69-0.98), and venous thromboembolism (HR 0.51, 95% CI 0.36-0.73). No statistically significant reduction was observed for heart failure (HR 0.72 [95% CI 0.47-1.10]). Conclusions Pre-infection COVID-19 vaccination is associated with lower risks of cardiovascular, cerebrovascular and venous thromboembolism events following SARS-CoV-2 infection in the pre- and post-Omicron eras, supporting its role within broader prevention strategies

5
Predictors of treatment outcomes in adults with drug-sensitive Tuberculosis in Maharashtra, India: A retrospective study

Parthasarathy, R.; Raj, Y.; Majumder, N.; Mitra, M.; Mehra, S.; Rao, R.; Rajan, S.

2026-05-15 infectious diseases 10.64898/2026.05.12.26352988 medRxiv
Top 0.3%
6.5%
Show abstract

Background: Tuberculosis (TB) remains the leading infectious cause of death worldwide, with India accounting for nearly one-fourth of global TB cases. Ni-kshay, the countrys digital case-based TB notification platform is rich in data pertaining to the continuum of care of TB patients. This study aims to develop a standardized analytical approach to programmatic data to identify predictors of unfavourable treatment outcomes and mortality among adult drug-sensitive TB patients at the state level for Maharashtra during 2021 and 2022. Methods: Two separate analyses were undertaken comparing treatment success with: (1) unfavourable outcomes (death, treatment failure, loss to follow-up, regimen change, or not evaluated); and (2) mortality. Multivariate logistic regression was used to compute adjusted odds ratios (aOR) for key risk factors, adjusting for age, gender, and weight. Results: The final cohort included 323,124 cases for unfavourable outcome analysis and 315,579 cases for mortality analysis. Increasing age, male gender, lower body weight, known HIV and diabetes comorbidities, tobacco and alcohol consumption, and "unknown" status for behavioural risks and comorbidity status were significantly associated with increased odds of both unfavourable outcomes and mortality. Conclusions: This study highlights the utility of programmatic data in identifying high-risk TB patients and offers a reproducible analytic framework.

6
Increasing frequency of secondary dengue infections in sequential outbreaks (2016-2024). Clinical impact and diagnostic challenges.

Espindola, S. L.; Pereson, M. J.; Lema, J. M.; Kachuk, A.; Carballo, G.; Aloisi, N.; Badano, M. N.; Miretti, M.; Di Lello, F. A.; Bare, P. C.

2026-06-01 infectious diseases 10.64898/2026.05.29.26354405 medRxiv
Top 0.4%
6.3%
Show abstract

Successive dengue virus (DENV) outbreaks can progressively reshape population immunity influencing disease expression and diagnostic performance. Objectives The aim was to evaluate the impact of secondary infections across sequential outbreaks on clinical severity, serotype dynamics and diagnostic concordance. Methods This retrospective study analyzed 976 febrile-stage samples from three sequential outbreaks in Misiones, Argentina. For serotyping and clinical analyses, 869 viremic samples confirmed by at least one direct method were included (2016: n=512; 2019: n=148; 2024: n=209). Additionally, 318 samples, including 107 non-viremic cases, were used to compare NS1 rapid diagnostic tests (NS1 Ag) and RT-PCR. Viral serotyping and clinical and laboratory markers of disease severity were evaluated. Results Secondary infections increased from 31.05% (2016) to 43.24% (2019) and 53.87% (2024) (p<0.0010). Serotype distribution shifted from DENV-1 predominance in 2016 (95.12%), DENV-1/DENV-4 co-circulation in 2019 (60.71%/39.29%), and DENV-2 predominance in 2024 (97.60%). Secondary infections were associated with more severe disease manifestations, particularly in 2024, with higher hematocrit (p=0.0120) and hemoglobin (p=0.0080), lower white blood cells (p=0.020) and platelet counts (p=0.0030), and elevated AST (p=0.0007) and ALT (p=0.0130). Concordance between NS1 Ag and RT-PCR was lower in secondary infections (k=0.457 vs k=0.759, p=0.0013). Conclusions The rising frequency of secondary infections may affect both clinical severity and diagnostic performance during outbreaks. The clinical impact was more evident in 2024, likely associated with the introduction of a new serotype. These findings highlight the need for optimized surveillance and diagnostic strategies to improve case detection and patient management during epidemics.

7
Promise vs. Proof in Digital Interventions for Antimicrobial Stewardship: A Systematic Review and Meta-Analysis of Randomized Controlled Trials

Matos Porto, A. P.; Gomes, M. S.; de Oliveira, V. F.; Mwanja, H.; Zhu, N.; Holmes, A.; Levin, A. S.; Costa, S. F.

2026-06-03 infectious diseases 10.64898/2026.06.01.26354656 medRxiv
Top 0.5%
4.9%
Show abstract

Background: Digital antimicrobial stewardship (AMS) interventions, such as clinical decision support systems, audit and feedback platforms, and electronic prescribing tools, have been increasingly adopted to improve antibiotic use. However, the effectiveness of these interventions across healthcare settings remains uncertain, and the certainty of the evidence has not been comprehensively evaluated. The objective of this study was to provide a comprehensive understanding of the role of digital interventions in optimizing antimicrobial use and improving clinical outcomes within a broad spectrum of healthcare settings. Methods: We conducted a systematic review and meta-analysis of randomized controlled trials evaluating digital AMS interventions that followed PRISMA 2020 guidelines and registered in PROSPERO CRD420251178854 and funded by the Wellcome Trust CAMO Net programme. Searches were performed across major databases. Primary outcomes included the appropriateness of antibiotic prescriptions and the antibiotic prescription rate. Secondary outcomes included 30 day mortality, 30 day hospital readmission, and length of hospital stay (LOS). Random effects models were used to pool effect sizes. Risk of bias was assessed RoB 2, and certainty of evidence was rated using GRADE. A Summary of Findings table was prepared to present effect estimates, sample sizes, and evidence certainty. Results: Eleven RCTs met the inclusion criteria, and nine were included in the quantitative synthesis. Digital AMS interventions did not show a significant effect on appropriateness of antibiotic prescribing (RR 0.99, 95%CI 0.93 to 1.05; very low certainty). There was no reduction in antibiotic prescription (RR 0.98, 95%CI 0.88 to 1.09), with substantial statistical heterogeneity and very low certainty. Across clinical outcomes, digital AMS showed no effect on 30 day mortality (RR 0.91, 95%CI 0.77 to 1.09; very low certainty) or 30 day readmission (RR 0.95, 95%CI 0.79 to 1.14; very low certainty). For LOS, results were inconsistent across studies, and the pooled effect showed no clinically meaningful change (MD 0.17 days, 95%CI 0.01 to 0.35; very low certainty). Most trials had some concerns of bias due to deviations from intended interventions. Conclusion: Meta-analyses of digital AMS RCTs showed a lack of evidence with a high level of certainty on antibiotic prescribing or clinical outcomes due to high heterogeneity in interventions and study designs, as well as RCTs' limitations (no adoption/fidelity metrics).

8
Within-household transmission risk of pulmonary tuberculosis in the era of universal antiretroviral therapy

Khan, P. Y.; Govender, I.; McCreesh, N.; Sithole, M.; Mkwanzai, E.; Sweeney, S.; Ording-Jespersen, G.; Wong, E. B.; Hanekom, W.; Houben, R. M. G. J.; White, R. G. M. G. J.; Smit, T.; Smith, M. J.; Fielding, K.; Grant, A. D.

2026-06-09 epidemiology 10.64898/2026.06.01.26354571 medRxiv
Top 0.5%
4.8%
Show abstract

Background Tuberculosis remains the leading infectious cause of death worldwide. In the WHO African region, declining incidence has coincided with antiretroviral therapy (ART) scale-up, though whether this reflects reduced progression to disease or reduced transmission is unclear. We evaluated how ART and symptom status influence within-household Mycobacterium tuberculosis complex (MTBC) transmission risk. Methods We conducted a case-contact household study in rural South Africa, enrolling index adults with bacteriologically-confirmed pulmonary tuberculosis. MTBC immunoreactivity was measured in all child household contacts (aged 2-14 years) as a proxy measure of within-household transmission. We assessed the influence of index person ART status and symptom status, and explored effect-measure modification of the association between index person HIV status and transmission risk by sex. Results Among 755 child contacts of 296 index persons, effective ART was not associated with within-household MTBC transmission risk (risk ratio [RR], 1.07; 95% CI, 0.66-1.74). Among PLHIV engaged in ART care, WHO TB four-symptom screen (WHO4SS) status was not associated with transmission risk (RR, 0.80; 95% CI, 0.43-1.47), although absence of reported cough reduced risk (RR, 0.61; 95% CI, 0.38-0.96). A pronounced interaction between sex and HIV status was observed: HIV-negative women had the highest within-household MTBC transmission risk (30.5% vs. 14.3% in women with HIV) whereas risks were similar between HIV-positive and HIV-negative men. Conclusions We found no evidence that effective ART or WHO4SS status influenced within-household MTBC transmission risk, though confidence intervals were wide. Absence of reported cough was associated with lower risk, and transmission risk was highest among child contacts of HIV-negative women. These findings suggest reported cough is a useful marker of transmission risk and that routine tuberculosis screening within ART care may reduce transmission from PLHIV; intensified efforts are nonetheless needed to achieve earlier tuberculosis detection in HIV-negative individuals.

9
Integrating vaccination with short-term behavioral guidance enables mpox outbreak control

Maniscalco, D.; Robineau, O.; Boelle, P.-Y.; Mailles, A.; Noel, H.; Tarantola, A.; Velter, A.; Colizza, V.

2026-05-28 infectious diseases 10.64898/2026.05.26.26354088 medRxiv
Top 0.6%
4.8%
Show abstract

Background. Despite the decline of the 2022 global outbreak, mpox remains an ongoing public health concern, with persistent transmission and emerging viral clades sustaining resurgence risk. Improving preparedness and response is a priority, yet it remains unclear how best pre-exposure vaccination and community response can effectively limit transmission under realistic conditions and whether behavioral adaptation is critical. Methods. We used a data-driven network model of mpox transmission among men who have sex with men in the Paris region, parameterized with sexual behavioral data and calibrated to surveillance data from the 2022 outbreak. We evaluated counterfactual scenarios by varying vaccination timing, rollout speed, prioritization, and behavioral responses. Results. Here we show that, with respect to the 2022 epidemic in the Paris region, vaccination alone delivered at the observed rollout speed would not have reproduced the observed epidemic decline, even if initiated the day of the first European alert, corresponding to 12 days before the first case was reported in France. Achieving comparable control through vaccination alone would have required more than a fourfold increase in rollout speed. Large-scale and long-term reductions in sexual contacts remain instrumental to limit the epidemic size, although earlier vaccination reduces the proportion of MSM needing to change behavior. In contrast, short-term behavioral measures adopted by the vaccinees, such as sexual abstinence during the 14-day immunity-building period, combined with moderately faster vaccine rollout, (+68% for 50% compliance; +34% for 75% compliance) could achieve comparable epidemic control. Targeting individuals with higher sexual activity further improved intervention efficiency. Conclusions. Under realistic reactive vaccination scenarios, mpox control still requires strong behavioral responses. Combining timely vaccination with short-term behavioral change guidance at vaccine administration offers a feasible path to limit transmission and strengthen outbreak preparedness and response.

10
Who infected the reported cases? Evidence from 678,482 COVID-19 cases with identified infector collected in routine surveillance in the Netherlands, 2020-2022.

Backer, J. A.; Leung, K. Y.; Andeweg, S. P.; Van de Kassteele, J.; Veldhuijzen, I.; Hahne, S.; Wallinga, J.

2026-05-17 epidemiology 10.64898/2026.05.15.26347859 medRxiv
Top 0.6%
4.4%
Show abstract

Background During infectious disease outbreaks, characteristics of reported cases are routinely collected. These give information on becoming infected but not on infecting others. We assess whether linking infectees to infectors, together with their characteristics, can help understand transmission. Methods From the start of the COVID-19 pandemic in the Netherlands, reported cases were asked to identify their most probable infector in routine surveillance, enabling the linking of cases. We assess for the period 27 February 2020 - 11 April 2022 whether the infectees of these transmission pairs are representative of all reported cases, whether the transmission pairs yield verifiable estimates of epidemiological characteristics (here the serial interval), and whether they provide information on transmission that cannot be obtained otherwise. Results Of 8,003,008 reported cases, 678,482 (8.5%) could be linked to their most probable infector. These infectees were largely representative of the reported cases regarding age group, sex, and geographical location. The mean serial interval of 3.6 days (sd 3.4 days) from transmission pairs aligns with literature. Transmissions between age groups largely follow known contact patterns. Most transmissions in September 2021 occurred between persons who were not (fully) vaccinated, indicating the effectiveness of the vaccine, and relatively few between persons with different vaccination status, indicating assortative mixing in vaccination status. Conclusion Transmission pairs can be efficiently collected in routine surveillance, providing insight into disease transmission. The current post-pandemic period provides an excellent opportunity to adjust reporting systems for linking infectees to their most probable infector as preparation for future outbreaks.

11
High prevalence of soil-transmitted helminth co-infections in persons with tuberculosis in South India

Narasimhan, P. B.; Jain, K.; Rajkumari, N.; Dauphinais, M. R.; Priyanga, J. R.; Shaikh, S.; Patel, J. U.; Babu, S. P.; Cintron, C.; Karoly, M.; Carwile, M. E.; Liu, A. F.; Maloomian, K.; Locks, L. M.; Mehta, S.; Sarkar, S.; Singh, U. B.; Ellner, J. J.; Salgame, P.; Heysell, S. K.; Hochberg, N. S.; Lakshminarayanan, S.; Sinha, P.

2026-06-02 infectious diseases 10.64898/2026.05.26.26353735 medRxiv
Top 0.7%
4.3%
Show abstract

Soil-transmitted helminths (STH) are a plausible but under-characterized comorbidity in tuberculosis. In this prospective South Indian cohort, multiplex stool PCR detected STH in 43% of 137 adults with pulmonary tuberculosis and 34% of 230 household contacts. Food insecurity independently predicted co-infection. Current adult deworming gaps warrant evaluation.

12
Heterogeneity in Mycobacterium tuberculosis immunoreactivity in young children in Blantyre, Malawi: a community-based survey

Rickman, H. M.; Phiri, M. D.; Mbale, H.; Feasey, H. R.; Nliwasa, M.; Chagaluka, G.; Seddon, J. A.; Mwandumba, H. C.; Horton, K. C.; Henrion, M. Y.; Mwenyenkulu, T.; Mbendera, K. N.; Nightingal, E. S.; Corbett, E. L.; MacPherson, P.

2026-05-21 infectious diseases 10.64898/2026.05.21.26349011 medRxiv
Top 0.7%
4.3%
Show abstract

Background: As tuberculosis (TB) incidence declines, transmission increasingly concentrates into vulnerable populations. There is an urgent need for affordable surveillance strategies to monitor trends, identify high-risk groups and target interventions. Mycobacterium tuberculosis (Mtb) immunoreactivity surveys indirectly detect transmission and therefore undiagnosed infectious disease. Methods: We conducted a cross-sectional community-based interferon-gamma release assay (IGRA) survey in children aged 1-4 years in Blantyre, Malawi. Community-representative participants were recruited using novel convenience sampling in health facilities alongside random household sampling, and tested for Mtb immunoreactivity using QFT-Plus IGRA. We constructed hierarchical Bayesian logistic regression models for IGRA positivity, with neighbourhood-level random effects. Findings: Of 1,545 participants, 102 (6.6%) had a positive IGRA: an annual risk of Mtb infection (ARTI) of 2.7% (95% CrI 2.2-3.2%). Immunoreactivity was higher in the poorest third of households (8.7% vs 4.9%; adjusted odds ratio: 1.88, 95% CrI 1.08-3.01) compared to the richest, but was not associated with HIV exposure, malnutrition or reported household TB exposure. There was substantial between-neighbourhood heterogeneity (ARTI range 1.1-4.1%). There was no association between neighbourhood-level TB case notifications and ARTI. Interpretation: An innovative convenience sampling approach identified a high burden and substantial spatial variation of recent TB transmission, which did not correspond to case notification rates. This strategy could support identification of high-risk populations, monitoring of trends and targeted public health interventions.

13
Knowledge, Attitudes, and Practices regarding Antibiotic Use and Antimicrobial Resistance (AMR) in Nepal

Thapa, D.; Magar, M. B.

2026-05-29 public and global health 10.64898/2026.05.27.26354255 medRxiv
Top 0.7%
4.2%
Show abstract

Background: Antimicrobial resistance is the world's silent pandemic. The public knowledge, attitudes, and practices (KAP) about antibiotic usage are strongly related to the growing problem in Nepal. Methods: A cross-sectional descriptive survey was done to 263 respondents. Information on KAP regarding antibiotics, primary healthcare sources, and demography was collected through a questionnaire. To identify health literacy gaps and characteristics that contribute to improper antibiotic use, this study assessed these variables across an age group from 18 to 60 years. Descriptive statistics analysis was performed to analyze the data. Results: The majority of respondents were between the ages of 18 and 39 (85.1%), female (63.1%), and had at least a bachelor's degree (67.8%). Significant misunderstandings about antibiotics remained, even though 77.6% of respondents correctly recognized antibiotics as effective against bacteria; 44.1% incorrectly believed that antibiotics cure viral diseases, and 87.8% felt that antibiotics should be stopped right away if adverse effects develop. In practice, 52.9% acknowledged quitting antibiotics as soon as symptoms improved, despite 89.4% consulting doctors. Additionally, 43% of respondents said they have taken antibiotics without a prescription, frequently due to pharmacist recommendations (21.67%) and financial or geographical constraints. The main sources of information were doctors (11.07%) and pharmacist-doctor combinations (14.88%), yet 81.8% of respondents said they had never heard of the phrase antimicrobial resistance. Conclusion: There is a significant lack between theoretical understanding and practical application, despite the high levels of fundamental knowledge toward the prohibition of non-prescription sales. Self-medication and early withdrawal are still common inappropriate practices. It is crucial to implement focused teaching initiatives that highlight the differences between bacterial and viral diseases as well as the risks associated with leftover medicine. It is advised to use digital platforms for younger demographics and to strengthen the role of pharmacists in order to reduce AMR.

14
Assessing the Impact of Interventions on Tuberculosis Control: India Based Modelling Framework

Raj, Y. A.; Parthasarathy, R.; Mitra, M. K.; Mehra, S.

2026-05-22 epidemiology 10.64898/2026.05.20.26353466 medRxiv
Top 0.7%
4.2%
Show abstract

Background India accounts for nearly one-fourth of the global tuberculosis (TB) burden. The country's progress towards elimination of TB is hindered by considerable heterogeneity in behavioural, social, and health system determinants, which influence transmission dynamics and care access. Evidence from the recent national TB prevalence survey showed that almost half of individuals with active disease were asymptomatic, underscoring the limitations of symptom -based case finding. Achieving the End TB targets will therefore require strategies that simultaneously address the substantial pool of individuals with undiagnosed, asymptomatic disease and those symptomatic individuals who do not seek care. Methods We developed a transmission model of TB that explicitly incorporates individuals with asymptomatic disease, and those who do not seek care. Model calibration was performed within a Bayesian framework using epidemiological and programmatic data for India. The calibrated model was then used to project the potential impact of intervention on TB incidence and mortality. Results Under the baseline scenario, the estimated TB incidence and mortality rates for 2024 were 180 (163-203) and 24 (18-31) per 100,000 population, respectively. Across all intervention scenarios targeting improved diagnosis, active case finding, nutrition support and their combination the reduction in incidence rate by 2030 ranged from 13% to 60% compared with 2025, while the corresponding decline in mortality rate ranged from 16% to 66%. Conclusion While individual interventions yield measurable reductions in TB incidence and mortality, but greater impact is achieved when implemented in combination reflecting the need for a comprehensive, multi-component response towards TB elimination.

15
Temporal and climatic drivers of uncomplicated malaria in Ghana: A Region Generalised Additive Model analysis.

Akurugu, E.; Awine, T.; Seidu, B.; Peprah, N. Y.; Mohammed, W.; Boateng, P.; Abiwu, P. H. A. K.; Silal, S. P.

2026-06-09 infectious diseases 10.64898/2026.06.06.26355054 medRxiv
Top 0.7%
4.1%
Show abstract

Abstract Background Malaria remains a major public health challenge in Ghana, despite recent reductions in cases due to various interventions. The endemicity of the disease varies across regions, influenced by diverse seasonal and temporal factors that support mosquito proliferation and malaria cases. This study used a Generalised Additive Models to explore the impact of weather conditions on malaria cases in Ghana. Methods Generalised Additive Models were used to examine the nonlinear effects of weather conditions on malaria cases. Monthly aggregated malaria cases from the District Health Information Management System II and average monthly rainfall and temperature data from the Ghana Meteorological Agency were analysed, covering 2012 to 2023. Regional Generalised Additive Models incorporating weather variables were developed, fitted, and validated against observed data using model diagnostics to identify the most suitable model for each region. Results The analysis revealed complex temporal patterns in malaria cases across Ghana, influenced by seasonal and long-term trends. Regions constituting the Coastal and Transitional Forest zones exhibited bimodal peak malaria seasons, while the Guinea Savannah showed a unimodal peak. Significant interactions between rainfall and temperature were identified, particularly in the Eastern region, where higher rainfall combined with temperatures around 27-28 {degrees}C were associated with higher malaria cases, reflecting the complex and region-specific nature of meteorological influences. Conclusions The findings point to the dynamic and heterogeneous nature of malaria caseloads in Ghana, emphasising the need for region-specific control strategies tailored to local climatic conditions. A key recommendation is the systematic integration of meteorological data into the National Malaria Data Repository to enable continuous monitoring of climatic influences and support timely, evidence-based intervention decisions. Future research should incorporate socio-economic factors, intervention coverage data, vector surveillance, and demographic characteristics into mathematical modelling frameworks for a more comprehensive understanding of malaria cases in Ghana.

16
Modelling Seasonal Trends Of Malaria Incidence In Nasarawa State, Nigeria Using Health Facility Surveillance Data

Iheanacho, G. I.; Ijomah, M. A.; Alabere, D. I.

2026-05-15 infectious diseases 10.64898/2026.05.12.26353062 medRxiv
Top 0.7%
4.1%
Show abstract

Malaria transmission in Nigeria is highly seasonal and climate-sensitive, yet routine surveillance and meteorological datasets remain underutilized for predictive modelling at subnational levels. This study modelled seasonal malaria incidence trends in Nasarawa State, Nigeria using routine surveillance and climatic data. A retrospective ecological time-series study was conducted using monthly confirmed malaria incidence data from all 13 Local Government Areas of Nasarawa State between 2021 and 2025. Rainfall and temperature were examined as the climatic predictors. Seasonal decomposition and cross-correlation analyses were performed to identify the temporal patterns and lag structures. Seasonal Autoregressive Integrated Moving Average (SARIMA) and Seasonal Autoregressive Integrated Moving Average with Exogenous Variables (SARIMAX) models were developed using the Box-Jenkins framework. Model performance was evaluated using the Root Mean Square Error (RMSE) and Mean Absolute Percentage Error (MAPE). Malaria incidence showed pronounced seasonal peaks, with the highest transmission occurring during the rainy season. Cross-correlation analysis identified rainfall at a one-month lag and contemporaneous temperature as significant predictors of malaria incidence. The SARIMAX model outperformed the univariate SARIMA model, achieving strong predictive accuracy (MAPE = 8.7%). Forecast projections indicate sustained transmission with a peak incidence expected between June and August 2026. Malaria transmission in Nasarawa follows a predictable seasonal pattern that is influenced by climatic variability. Incorporating rainfall and temperature into SARIMAX models improves the forecasting performance and provides evidence supporting climate-informed malaria surveillance and preparedness in endemic settings.

17
Genital Inflammatory Responses in Women Living with HIV Randomized to Copper or Levonorgestrel Intrauterine Contraceptives: A secondary analysis of a randomized trial

Happel, A.-U.; Passmore, J.-A. S.; Sinkala, M.; Jaumdally, S.; Gamieldien, H.; Hu, N.-C.; Langwenya, N.; Jones, H. E.; Hoover, D.; Myer, L.; Todd, C.

2026-05-26 sexual and reproductive health 10.64898/2026.05.24.26353969 medRxiv
Top 0.7%
4.1%
Show abstract

Background: Intrauterine contraceptives (IUCs) are effective, but effects on genital inflammation among women living with HIV (WLHIV) by antiretroviral therapy (ART) use are unclear. We evaluated the longitudinal effects of copper IUC (C IUC) and the levonorgestrel intrauterine system (LNG IUS) on cervicovaginal cytokine profiles in a secondary analysis of a randomized trial (NCT01721798, 2013 to 2016). Methods: Cervicovaginal secretions were collected from 100 WLHIV (non ART users; ART users) randomized 1:1 to C IUC or LNG IUS. Twenty eight cytokines were measured prior to insertion and 3 and 6 months post insertion. Cytokine concentrations at each follow up visit were compared with baseline, using participant fixed effects models stratified by ART status. Results: At enrolment, non ART users had higher average concentrations of most cytokines (21/28) than women using ART. Among non-ART users, IUC use was not associated with cytokine increases; only MCP1 increased significantly at 3 months among C IUC users (log10 geometric mean ratio 0.77, 95%CI 0.38 to 1.17), while none increased with LNG IUS use. Among ART users, C IUC insertion resulted in broad and sustained cytokine increases at both 3 (16/28) and 6 months (15/28). At month 3, the largest increases in log10 geometric mean were observed for IL6 (1.04, 0.72 to 1.36), RANTES (0.97, 0.54 to 1.40), MCP1 (0.71, 0.46 to 0.96), MIP1; (0.66, 0.37 to 0.94), and GCSF (0.63, 0.36 to 0.89), which was maintained until month 6. Cytokine changes following LNG IUS insertion were minimal (IL5, month 3). Conclusions: Among ART users, C IUC is associated with increases in cervicovaginal cytokines, across functional classes. This supports LNG IUS as a less inflammatory option for WLHIV to minimize genital immune activation.

18
Reproductive health in Mexican women with systemic lupus erythematosus: pregnancy outcomes, menstrual irregularities and early menopause

Sevilla-Parra, G.; Bravo-Garcia, F.; Mier y Teran Guevara, M.; Montes-Garcia, A.; Schäfer, A.; Ochoa-Rodriguez, N.; Bienvenu Caballero, M.; Gonzalez Zenteno, S. G.; Pena-Ayala, A.; Tinajero-Nieto, L.; Torres-Valdez, E.; Martinez, D.; Hernandez-Ledesma, A. L.; Medina-Rivera, A.; Alpizar-Rodriguez, D.

2026-06-09 sexual and reproductive health 10.64898/2026.06.07.26354004 medRxiv
Top 0.8%
4.0%
Show abstract

Objective: To characterize pregnancy outcomes and menstrual irregularities in Mexican women with systemic lupus erythematosus (SLE) and identify clinical factors associated with adverse pregnancy outcomes and early-onset menopause. Methods: We conducted a cross-sectional study of women with SLE enrolled in the Mexican Lupus Registry (LupusRGMX) between May 2021 and September 2024. Clinical and reproductive data were collected using standardized questionnaires. Menopause was defined as the absence of menstruation for [&ge;]12 consecutive months, and early menopause as onset before age 40. Univariable and multivariable logistic regression analyses were used to identify factors associated with pregnancy complications and early menopause. Results: A total of 210 women were included. Median age was 38 years (IQR 29-46) and median disease duration was 4 years (IQR 1-10). Among women with a history of pregnancy (47%), full-term delivery predominated (61%), while pregnancy loss occurred in 26% and preterm delivery in 13%. Pregnancy complications were reported in 9.6%, most commonly preeclampsia (6.7%). Younger maternal age was independently associated with pregnancy complications (OR 0.89, 95% CI 0.83-0.95) and adverse outcomes (OR 0.95, 95% CI 0.92-0.98). Higher disease activity was associated with complications in univariable analysis. Most pregnancies (68.3%) occurred before diagnosis. Early menopause was observed in 6.2% and independently associated with longer disease duration and older age. Conclusion: Younger maternal age was independently associated with adverse pregnancy outcomes, whereas disease activity showed an association in univariable analysis. Most pregnancies occurred prior to SLE diagnosis. Early menopause was associated with longer disease duration, suggesting impact of cumulative disease burden on ovarian function.

19
Predictors of poor glycemic control among adults attending a peri-urban diabetic clinic in Wakiso district, Uganda: A cross-sectional study using modified Poisson regression analysis.

Larissa, K. N. Y.; KOOKO, R.; Musoke, D.; Rutebemberwa, E.; Nakisita, O.; Dandy, M. W. W.; Somse, P.

2026-06-03 public and global health 10.64898/2026.06.02.26354687 medRxiv
Top 0.8%
4.0%
Show abstract

Background: Poor glycemic control, a contributor to the development of diabetes related complications among patients with diabetes mellitus, remains a public health challenge in low- and middle-income countries. In Uganda, limited evidence exists on predictors of poor glycemic control among diabetic patients attending peri-urban primary healthcare facilities. The study assessed predictors of poor glycemic control among adults attending the diabetic clinic at Kasangati Health Centre IV in Wakiso district. Methods: We conducted cross-sectional study among 283 diabetic patients attending Kasangati Health Centre IV between March and April 2025. Data were collected using interviewer-administered structured questionnaires and data abstraction tools. Poor glycemic control was defined as glycated hemoglobin (HbA1c) levels [&ge;]7%. Modified Poisson regression with robust standard errors was used to determine factors associated with poor glycemic control. Adjusted prevalence ratios (aPRs) with 95% confidence intervals (CIs) were reported. Results: Overall, 67.8% of the participants had poor glycemic control. Poor glycemic control was significantly associated with older age, low income status (aPR: 1.4, 95%CI: 1.24-1.58), use of multiple anti-diabetic medications, non-adherence to regular follow-up (aPR: 1.5, 95%CI: 1.33-1.65), medication side effects (aPR: 1.2, 95%CI: 1.01-1.32), physical inactivity (aPR: 1.1, 95%CI: 1.05-1.21), non-adherence to recommended dietary plans (aPR: 1.1, 95%CI: 1.02-1.22), perceived treatment regimen complexity (aPR: 1.2, 95%CI: 1.12-1.34), stress (aPR: 1.1, 95%CI: 1.08-1.20), lack of peer support groups (aPR: 1.2, 95%CI: 1.08-1.23), and high costs of accessing care (aPR: 1.2, 95%CI: 1.17-1.33). Conclusion: Almost two-thirds of the diabetic patients suffered from poor glycemic control which was determined by various socio-economic, behavioral, clinical and health system factors. Enhancing adherence counseling, encouraging healthy lifestyles, adopting age-based supportive healthcare approaches, better psychosocial support and reduction of cost barriers in accessing diabetic healthcare could improve the glycemic status of diabetic patients in peri-urban primary healthcare settings.

20
Derivation and validation of clinical prediction models for viral etiologies of acute diarrhea in North American children presenting for emergency care

Fonseca-Romero, P.; Smith, T.; Ahmed, S. M.; Jones, A.; Alekhina, N.; Brintz, B. J.; Dien Bard, J.; Chapin, K. C.; Cohen, D. M.; Festekjian, A.; Jackson, J. T.; Kanwar, N.; Larsen, C. D.; Leber, A. L.; Selvarangan, R.; Freedman, S.; Pavia, A. T.; Leung, D. T.

2026-05-18 epidemiology 10.64898/2026.05.14.26353143 medRxiv
Top 0.8%
4.0%
Show abstract

Background: Diarrheal illness in children leads to 3.5 million care visits and 200,000 hospitalizations annually in the US. Viruses are responsible for most pediatric diarrheal cases, yet limited guidance on distinguishing viral from bacterial etiologies complicates clinical decision-making, especially regarding empiric antibiotic use. Methods: We used clinical and qualitative molecular etiologic data from the Implementation of Molecular Diagnostics for Pediatric Acute Gastroenteritis (IMPACT) study to develop prediction models for viral etiology of diarrhea. We used conditional random forests to identify informative clinical and environmental predictors and evaluated model performance using logistic regression and random forests within a 5-fold cross-validation framework. We conducted external validation using the Alberta Provincial Pediatric Enteric Infection Team (APPETITE) dataset. Results: Variables predictive of viral etiology included younger age, non-bloody diarrhea, winter season, and presence of vomiting. External validation showed that an AUC of 0.82 can be achieved with a parsimonious 5-variable model, yielding a sensitivity of 0.92 and specificity of 0.55 Conclusion: Our results suggest that in North American healthcare settings, clinical prediction models can inform decision-making by identifying children with a high probability of viral diarrhea, improving diagnostic clarity, and reducing unnecessary testing and treatment.